PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676722160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 140aa    MW: 16048 Da    PI: 7.3439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676722160genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000192042123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C  C + Fs+   L  H++ H
  676722160 20 YICDFCERGFSNAQALGGHMNIH 42
               89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-71746No hitNo description
Gene3DG3DSA:3.30.160.603.3E-61844IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1772047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MNRKYLDRRS YSWSGQARPY ICDFCERGFS NAQALGGHMN IHRKDRAKLR QANLKEDDSE  60
DSVCTSSRNR FPQDLIELPF FVDTVSSTTK EEKNTSGGDY LGDEEEKKMK MLQKALSQSA  120
EVIDLELRLG LDPYKKSPST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139289.12e-90PREDICTED: transcriptional regulator TAC1-like
RefseqXP_013746638.12e-90PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A078CMA13e-90A0A078CMA1_BRANA; BnaA04g04520D protein
TrEMBLM4DEE03e-90M4DEE0_BRARP; Uncharacterized protein
STRINGBra014861.1-P8e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-81C2H2 family protein